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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12065135_12066609_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12065135 - 12066609
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.6
0.69
0.8
73.6
30.3
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009696
12064992 - 12080400
15409