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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12065135_12067049_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12065135 - 12067049
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TAATACGTACAA
Flanking Amino Acid:
GLSTLGAGVYVYKTLRENKE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
74.5
0.55
0.9
66.1
40.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
42
-0.6
2.3
55.89
42.4

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000028051
12063312 - 12080400
17089