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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12067141_12068150_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12067141 - 12068150
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTACT
5'SS Class:
major
3'SS Sequence:
TTTTCACATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
ARSQENASSPGAASRGSAAP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
73.2
37.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.9
74.4
34.5
Minor 5ss
31.7
-2.1
3
39.7
40.1
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000024644
12064741 - 12080400
15660