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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12067141_12069294_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12067141 - 12069294
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTACT
5'SS Class:
major
3'SS Sequence:
ATGTCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTGTAGTAAAAT
Flanking Amino Acid:
ARSQENASSPAPEAHPEVPS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
73.2
37.4
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
71.5
0.48
0.9
63.8
37.7
Minor 5ss
31.7
-2.1
3
39.7
40.1
Minor BPS
44.8
-0.3
2.5
69.94
46.5

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028051
12063312 - 12080400
17089