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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12068175_12069294_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12068175 - 12069294
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTGTAGTAAAAT
Flanking Amino Acid:
SPGAASRGSAAPEAHPEVPS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
71.5
0.48
0.9
63.8
37.7
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
44.8
-0.3
2.5
69.94
46.5

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000024644
12064741 - 12080400
15660