About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12071356_12072014_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12071356 - 12072014
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATAC
Flanking Amino Acid:
ISYDKCLIATGGTPRNLPAI
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
77.3
37.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.7
0.6
0.7
73
25.3
Minor 5ss
35.6
-1.6
3.8
56.2
48
Minor BPS
49.6
-0
1.9
64.25
41.4

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000028051
12063312 - 12080400
17089