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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12072092_12073630_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12072092 - 12073630
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
ATACATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GGTATTTGAAAT
Flanking Amino Acid:
VQQRLTLFRKVEDFKSLEKI
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
74.7
0.56
0.9
70.4
40.1
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
48.8
-0
1.5
64.4
39.3

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000028051
12063312 - 12080400
17089
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089