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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12073740_12074424_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12073740 - 12074424
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGAGATGTAAGA
Flanking Amino Acid:
SELACALGRRARTRGLEVIQ
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.8
0.67
0.8
77
31.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
39.5
-0.8
2.3
49.27
41.7

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000028051
12063312 - 12080400
17089