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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12075589_12075670_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12075589 - 12075670
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAATTATAAATT
Flanking Amino Acid:
LVIKLKDGRKVETDHIVAAV
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
65.3
0.34
1
60
39.9
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
50.7
0.1
1.9
70.77
40.2

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409
ENSAPLT00000028051
12063312 - 12080400
17089