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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12078313_12079366_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12078313 - 12079366
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
GGTTCTTTGACG
Flanking Amino Acid:
DTPKSATEQSGTGIRSESET
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
74
0.6
1
65.6
41.1
Major PPT
68.9
0.43
0.9
68.6
36.6
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
69.6
0.47
1.3
68.14
39.4

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028051
12063312 - 12080400
17089
ENSAPLT00000024644
12064741 - 12080400
15660
ENSAPLT00000020815
12063312 - 12080400
17089
ENSAPLT00000009696
12064992 - 12080400
15409