About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12086320_12086528_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12086320 - 12086528
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
EKEKEEILRQRRLNERERIG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
56.7
42.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
32.3
-2
3.2
42.1
44.9
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
NKAP
Ensembl Gene ID:
ENSAPLG00000010799
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011258
12086078 - 12090140
4063