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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12086610_12087284_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12086610 - 12087284
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGGCAT
5'SS Class:
major
3'SS Sequence:
AGGTCTTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
AGATTCATAAGT
Flanking Amino Acid:
WGLSPKVPDPDSLTLPFKNI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
63.3
42.8
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
64.2
0.32
1
56
44
Minor 5ss
33.7
-1.9
3.4
44
44.5
Minor BPS
49.9
0.08
1.9
68.84
41.6

Associated Gene:

Gene:
NKAP
Ensembl Gene ID:
ENSAPLG00000010799
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011258
12086078 - 12090140
4063