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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12087462_12089180_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12087462 - 12089180
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTCTGTGGC
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TGTTTTTTAAAG
Flanking Amino Acid:
SSGKKRCFLLFYGHALLPGE
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.3
49.2
41
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
80.3
0.68
1
82.2
33.3
Minor 5ss
37.1
-1.5
3.1
49.4
41.3
Minor BPS
66.7
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
NKAP
Ensembl Gene ID:
ENSAPLG00000010799
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011258
12086078 - 12090140
4063