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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12089331_12089965_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12089331 - 12089965
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTGCCCATACT
Flanking Amino Acid:
ESSGYVMSGSRHRRMEAVRL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
45.1
-0.3
2.3
69.74
46.6

Associated Gene:

Gene:
NKAP
Ensembl Gene ID:
ENSAPLG00000010799
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011258
12086078 - 12090140
4063