About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12091606_12091913_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12091606 - 12091913
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTCCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTCTTACTA
Flanking Amino Acid:
FFLESSRLIFRPEYCRFREK
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78
0.63
0.7
69.1
31.5
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
60.6
0.33
1.6
67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010960
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011405
12091518 - 12093609
2092