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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12091967_12092726_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12091967 - 12092726
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAA
U12 Branch Point Sequence:
TGCCCTGTATCT
Flanking Amino Acid:
IIEISKIKPDTFPVEVFFFL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
49.7
-0
1.3
61.4
36.2
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
45.9
-0.2
2.2
65.63
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010960
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011405
12091518 - 12093609
2092