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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12093371_12093526_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12093371 - 12093526
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACATTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.4
0.55
1
75.1
33.4
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
55
0.24
1.8
75.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010960
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011405
12091518 - 12093609
2092