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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12106837_12106921_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12106837 - 12106921
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCCCCTCCC
5'SS Class:
weak_major
3'SS Sequence:
CGCTCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GCAGCACTAATG
Flanking Amino Acid:
MSSHKTFKIKR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.3
54.2
40.9
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
78.8
0.65
0.8
72.4
32.2
Minor 5ss
25.2
-2.9
3.8
34.2
35.8
Minor BPS
42.4
-0.7
2
42.84
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027473
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024219
12106834 - 12108814
1981