Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12114086_12118509_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12114086 - 12118509

Intron Length:

4424

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGA|GCCTGTCCA

5'SS Class:

weak_major

3'SS Sequence:

CTGTGGCCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCCCAC

U12 Branch Point Sequence:

GGTGTCCCACCT

Flanking Amino Acid:

MKLSDRTAGSRERPQA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.02

1.3

50.4

Major BPS

47.8

-0.1

1.4

58.1

40.4

Major PPT

60.1

0.23

1.1

54.3

41.5

Minor 5ss

-2.6

3.6

30.1

36.1

Minor BPS

40.9

-0.6

2.1

58.06

44.5

Associated Gene:

Gene:

SOWAHD

Ensembl Gene ID:

ENSAPLG00000017183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024270

12113277 - 12118528

5252