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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12114736_12119115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12114736 - 12119115
Intron Length:
4380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
HGHCLVRRAKGEGCRTVPLS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.8
81.5
34.7
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047973
12114558 - 12138182
23625
ENSAPLT00000011624
12114558 - 12138182
23625