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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12119231_12125516_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12119231 - 12125516
Intron Length:
6286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTCCCAACA
Flanking Amino Acid:
HGFCFNILCVGETGLGKSTL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.3
0.73
0.8
78.5
28.8
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
62.5
0.39
1.9
80.29
35.2

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047973
12114558 - 12138182
23625
ENSAPLT00000011624
12114558 - 12138182
23625