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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12131564_12131830_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12131564 - 12131830
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TACTCCTTATCT
Flanking Amino Acid:
ARQYPWGTVQVENEAHCDFV
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.2
37.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.4
0.62
0.8
72.7
32.2
Minor 5ss
27.6
-2.6
2.7
23.8
36.9
Minor BPS
73.6
0.82
1.6
85.19
41.2

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011624
12114558 - 12138182
23625
ENSAPLT00000047973
12114558 - 12138182
23625