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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12132000_12132228_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12132000 - 12132228
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATCC
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGTCATTGGACT
Flanking Amino Acid:
KDTDPDSKPFSLQETYEAKR
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.6
35.1
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.3
0.79
0.6
84.7
23.2
Minor 5ss
32.4
-2
3.2
42
45
Minor BPS
49.7
0.06
1.7
71.48
38.9

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047973
12114558 - 12138182
23625
ENSAPLT00000011624
12114558 - 12138182
23625