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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12132741_12134679_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12132741 - 12134679
Intron Length:
1939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TAGTTCTTACAT
Flanking Amino Acid:
QTLKRDKERKN*
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
58.2
0.34
1.7
73.86
42.8

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011624
12114558 - 12138182
23625