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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12132741_12137032_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12132741 - 12137032
Intron Length:
4292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
QTLKRDKERKNSGFL*
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047973
12114558 - 12138182
23625