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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12134723_12137032_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
12134723 - 12137032
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.3
37.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
41
-1
3.4
55.7
43.3
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
SEPTIN6
Ensembl Gene ID:
ENSAPLG00000011134
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011624
12114558 - 12138182
23625