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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12146477_12147726_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12146477 - 12147726
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATA
Flanking Amino Acid:
KLKRQLSPPDSPEPDQVPEP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.7
0.65
0.8
73.5
31.1
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
61.1
0.34
1.5
71.74
33.7

Associated Gene:

Gene:
NKRF
Ensembl Gene ID:
ENSAPLG00000012272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012769
12145450 - 12150177
4728