About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12154967_12155945_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12154967 - 12155945
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GAACCTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TCTTCTTGAACC
Flanking Amino Acid:
RFVSKMFHPNVYADGSICLD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
67.6
0.4
0.9
58.4
42.5
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
73.5
0.72
1.4
79.01
36.5

Associated Gene:

Gene:
UBE2A
Ensembl Gene ID:
ENSAPLG00000024885
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041601
12154355 - 12156818
2464