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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12156036_12156778_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12156036 - 12156778
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGAAATC
5'SS Class:
major
3'SS Sequence:
CTTTCACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTCTCTTTCACC
Flanking Amino Acid:
PLLIGEKRKRGTFKLTIEFT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
64.4
40
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.8
74.4
29.5
Minor 5ss
32.4
-2
3.2
43.5
43.8
Minor BPS
61.8
0.35
1.8
69.26
43

Associated Gene:

Gene:
UBE2A
Ensembl Gene ID:
ENSAPLG00000024885
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041601
12154355 - 12156818
2464