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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12170363_12170707_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12170363 - 12170707
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATGGT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTGTCTTGTATT
Flanking Amino Acid:
RDEGSKAFFKAAAV*
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
65.7
40.2
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
85.2
0.79
0.8
80.1
32
Minor 5ss
27.2
-2.6
3.4
40.6
45.6
Minor BPS
55.8
0.26
1.8
76.18
41.3

Associated Gene:

Gene:
SLC25A5
Ensembl Gene ID:
ENSAPLG00000021624
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041347
12170349 - 12173412
3064