About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12170786_12171389_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12170786 - 12171389
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGATTCCTAACG
Flanking Amino Acid:
RMMMQSGRKGTDIMYTGTID
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
79.9
0.67
0.9
74
36.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
60
0.17
1.8
65.75
41.5

Associated Gene:

Gene:
SLC25A5
Ensembl Gene ID:
ENSAPLG00000021624
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044265
12170388 - 12173412
3025
ENSAPLT00000041347
12170349 - 12173412
3064