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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12198489_12202834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12198489 - 12202834
Intron Length:
4346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
CATTTCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GATTCATCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64
42.4
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
71.4
0.48
1
65.9
40.5
Minor 5ss
28.1
-2.5
3.4
29
43.5
Minor BPS
47.4
-0.1
2
67.91
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012389
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036603
12198032 - 12208416
10385