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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12203332_12204687_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
12203332 - 12204687
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GATAATTACCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATATTGATAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
57
0.16
1
47.8
44.5
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
48.3
-0
2.2
71.68
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012389
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012889
12202835 - 12208416
5582