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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12203332_12206161_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12203332 - 12206161
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCTGATTT
Flanking Amino Acid:
KDFVQLASQKV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
1
83.8
30.3
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
62.9
0.48
1.7
80.66
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012389
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036603
12198032 - 12208416
10385