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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12214001_12215621_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12214001 - 12215621
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCCAATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTCTTCCAATT
Flanking Amino Acid:
TLRDWESQFTFKYHHVGKLL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
80.6
0.69
0.8
77.2
35.6
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
49.2
0.02
1.8
73.9
37.2

Associated Gene:

Gene:
PGRMC1
Ensembl Gene ID:
ENSAPLG00000012420
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012925
12213623 - 12217633
4011