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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12215778_12217290_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12215778 - 12217290
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
VTRARKFYGPEGPYGIFAGR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
PGRMC1
Ensembl Gene ID:
ENSAPLG00000012420
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012925
12213623 - 12217633
4011