About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12235185_12249086_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12235185 - 12249086
Intron Length:
13902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GAAAATTTAACC
Flanking Amino Acid:
AGFYSCLKSKNDYIMATGPT
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81
0.7
0.8
78.1
34.3
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
54.2
0.11
1.5
59.52
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012423
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023467
12234781 - 12276248
41468