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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12258751_12261227_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12258751 - 12261227
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATC
Flanking Amino Acid:
NIPGRVKTLQLQLQQNIRFG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.9
0.67
0.8
74
34.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
61.4
0.34
1.5
69.41
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012423
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023467
12234781 - 12276248
41468
ENSAPLT00000012938
12227910 - 12276248
48339