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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12301421_12302219_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12301421 - 12302219
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTACTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTCTTTACTC
Flanking Amino Acid:
ADIEYIEDQKVQGQDYAALL
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
70
35.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.1
0.7
0.9
78.3
34.5
Minor 5ss
28.4
-2.5
2.8
33.3
41.7
Minor BPS
65.9
0.48
1.6
73.34
38.7

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361