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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12303530_12304196_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12303530 - 12304196
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
IYEEEIAELSNLNKNVPIFV
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361