About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12304319_12304748_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12304319 - 12304748
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTGTTTTTTACT
Flanking Amino Acid:
CPLCKEGLSECLAMRKYCKT
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.3
40.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
90.3
0.91
0.7
86.2
26.6
Minor 5ss
35.9
-1.6
3.2
48.4
47.4
Minor BPS
67
0.62
1.6
82.93
38.6

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361