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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12304864_12308039_R

Intron Information:

Intron Rank:
6
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
12304864 - 12308039
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCATT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTCCAATCCAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
GTCTTTTGGATT
Flanking Amino Acid:
PSDLDCSLCMRLFYEPVTTP
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
74.4
41.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
79.3
0.66
0.9
71.5
38.5
Minor 5ss
74.3
0.82
1.9
83.7
34.7
Minor BPS
51.5
0.13
1.4
67.18
38.3

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361