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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12310575_12312715_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12310575 - 12312715
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCA
Flanking Amino Acid:
NKTAKSEAQKLLLSLFSLIP
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.5
0.73
0.8
77.2
35.4
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
51.3
0.04
1.8
68.42
38

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361