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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12313523_12314171_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12313523 - 12314171
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
LQKYNEALSLAPNDHLLYSN
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
86.3
0.82
0.7
81.1
30.8
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
LONRF3
Ensembl Gene ID:
ENSAPLG00000012610
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013144
12300412 - 12314772
14361