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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12325660_12327288_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12325660 - 12327288
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TAAATAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATGTAAATAATT
Flanking Amino Acid:
KWRVDVAISTSSLARALQPS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
80
0.75
1
78.6
31
Major PPT
69
0.43
1
64.1
45.4
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
47.8
-0
2
69.89
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012635
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013167
12323711 - 12374359
50649