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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12327385_12331578_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12327385 - 12331578
Intron Length:
4194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATTT
Flanking Amino Acid:
TDFSSVVFGNRRPVSEGTAL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.9
0.61
0.8
71.1
34.8
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
58.1
0.33
1.7
77.22
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012635
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013167
12323711 - 12374359
50649