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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12339030_12341374_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12339030 - 12341374
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGCGGC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
TDPLRRFHSNRWNLTSCGTS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
57.2
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
30.7
-2.2
3.4
41.6
45.2
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
FAM199X
Ensembl Gene ID:
ENSAPLG00000012865
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013392
12334269 - 12346214
11946