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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12341595_12343325_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12341595 - 12343325
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
CGCTTATTACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TCTCGCTTATTA
Flanking Amino Acid:
DWSDSEFEWQLPGSDITSGS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
58.6
0.19
1.1
57.2
41.6
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
49.7
-0
2
64.27
42.7

Associated Gene:

Gene:
FAM199X
Ensembl Gene ID:
ENSAPLG00000012865
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013392
12334269 - 12346214
11946