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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12343476_12343810_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12343476 - 12343810
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATTG
5'SS Class:
major
3'SS Sequence:
CTTTGGGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATAGTTTTAAAT
Flanking Amino Acid:
PWSAMTNDEQVEYIEYLSRK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
0.9
70.9
35.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.8
0.47
1
61.5
44.5
Minor 5ss
35.5
-1.7
3.2
46.6
48.7
Minor BPS
58.7
0.35
1.5
71.8
39.2

Associated Gene:

Gene:
FAM199X
Ensembl Gene ID:
ENSAPLG00000012865
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013392
12334269 - 12346214
11946