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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12343973_12344832_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12343973 - 12344832
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GCTTTAGTAATT
Flanking Amino Acid:
NCLTDEKLKQVRNYIKEHGP
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
73.3
0.53
1
74.2
34.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
47.9
-0
2.2
68.96
42.4

Associated Gene:

Gene:
FAM199X
Ensembl Gene ID:
ENSAPLG00000012865
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013392
12334269 - 12346214
11946